Basic Information
Locus ID:
nbis-gene-18460
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 3956799 | 3961711 | - | nbis-gene-18460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 60,624.42 Da | 68.35 | 74.67 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 502 | 545 | 7.15175E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 305 | 348 | 1.86022E-16 | - |
| Pfam | PF13639 | Ring finger domain | 305 | 348 | 2.1E-12 | IPR001841 |
| Pfam | PF13359 | DDE superfamily endonuclease | 45 | 110 | 4.9E-7 | IPR027806 |
| Pfam | PF13639 | Ring finger domain | 502 | 545 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 489 | 548 | 1.2E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 354 | 3.28E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 467 | 550 | 3.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 353 | 1.1E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 305 | 348 | 0.0084 | IPR011016 |
| SMART | SM00184 | ring_2 | 306 | 347 | 1.6E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 503 | 544 | 4.2E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 502 | 545 | 0.055 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 503 | 545 | 12.754832 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 306 | 348 | 12.69582 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 281 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55350.1 | PIF / Ping-Pong family of plant transposases. | 0 |
| RefSeq | XP_051230641.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Lolium perenne] | 0 |
| Q9M2U3 | Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0RCA7 | RING-type E3 ubiquitin transferase OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G00766 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.1990, AH04.2286, AH06.708, BH04.2231, BH04.2361 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0693130, gene-QOZ80_9BG0718900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0358530.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_014638, gene-QYE76_051889, gene-QYE76_051890 ... |
| Poaceae | Oryza coarctata | 2 | Oco21G010090, Oco22G011410 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47690.1, LOC_Os11g47700.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_03G351000, gene-BS78_05G282700, gene-BS78_K266700 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604105 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G003990, Chr17G003690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G221800, Tel4E01G222000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG028170, gene_TRIDC4BG022390 |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G174400.1.cds1, TraesCS4A02G174500.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb091480_P001, Zm00001eb164680_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18460, nbis-gene-45969 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18288, Zma_g18289, Zma_g19157 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.763 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9472 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21882 |