Basic Information
Locus ID:
nbis-gene-18340
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 3401639 | 3404948 | + | nbis-gene-18340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 59,579.54 Da | 38.32 | 86.73 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 404 | 558 | 1.77654E-74 | - |
| Pfam | PF00190 | Cupin | 269 | 361 | 4.7E-8 | IPR006045 |
| Pfam | PF00190 | Cupin | 402 | 544 | 1.9E-23 | IPR006045 |
| Pfam | PF00190 | Cupin | 67 | 124 | 1.2E-8 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 268 | 550 | 1.82E-37 | IPR011051 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 62 | 124 | 1.83E-8 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 401 | 560 | 4.6E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 266 | 383 | 4.8E-15 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 57 | 137 | 1.0E-7 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 61 | 363 | 3.1E-21 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 401 | 545 | 2.7E-17 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 464 | 480 | 6.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 417 | 437 | 6.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 500 | 518 | 6.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 482 | 497 | 6.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 522 | 539 | 6.1E-13 | IPR006044 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 249 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_039798952.1 | 12S seed storage globulin 1-like [Panicum virgatum] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U4X8 | Cupin type-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_34306 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology