Basic Information
Locus ID:
nbis-gene-18156
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 2502645 | 2513242 | - | nbis-gene-18156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.13 | 50,702.46 Da | 35.59 | 78.44 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12246 | RRM1_U1A_like | 28 | 105 | 4.35369E-47 | - |
| CDD | cd12247 | RRM2_U1A_like | 183 | 253 | 1.87447E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 247 | 2.4E-12 | IPR000504 |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 269 | 454 | 2.1E-93 | IPR021131 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 29 | 99 | 3.3E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 176 | 250 | 4.97E-16 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 119 | 6.31E-23 | IPR035979 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 287 | 407 | 2.62E-25 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 268 | 455 | 5.6E-97 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 181 | 253 | 7.6E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 21 | 125 | 3.2E-29 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 28 | 102 | 4.9E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 186 | 255 | 5.4E-12 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 260 | 11.946341 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 27 | 106 | 14.419374 | IPR000504 |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 317 | 334 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 455 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_039803253.1 | U1 small nuclear ribonucleoprotein A [Panicum virgatum] | 0 |
| A2Y0J7 | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0U454 | U1 small nuclear ribonucleoprotein A OS=Panicum virgatum OX=38727 GN=PVAP13_3NG213395 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology