Basic Information
Locus ID:
nbis-gene-18124
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
divergent subfamily of APPLE domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 2321487 | 2329415 | + | nbis-gene-18124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 55,292.43 Da | 69.74 | 56.38 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 455 | 497 | 9.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 450 | 499 | 1.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 441 | 507 | 7.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 456 | 496 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 456 | 497 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034601781.1 | probable E3 ubiquitin-protein ligase HIP1 [Setaria viridis] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U1E7 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_33406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology