Basic Information
Locus ID:
nbis-gene-17934
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 1357019 | 1370422 | + | nbis-gene-17934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 24,479.91 Da | 40.47 | 86.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 105 | 177 | 3.2E-16 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 21 | 179 | 6.64E-26 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 146 | 196 | 2.2E-73 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 22 | 145 | 2.2E-73 | - |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 161 | 179 | - | IPR031303 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_004960650.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X2 [Setaria italica] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9JBF4 | S-adenosyl-L-methionine-dependent methyltransferase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology