Basic Information
Locus ID:
nbis-gene-17920
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 1273025 | 1276406 | - | nbis-gene-17920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 26,247.48 Da | 44.12 | 68.53 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 30 | 235 | 4.0E-75 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 136 | 225 | 4.91E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 134 | 238 | 8.9E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 138 | 226 | 27.94787 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_039836129.1 | auxin-responsive protein IAA17-like [Panicum virgatum] | 0 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6T0Q0 | Auxin-responsive protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G08940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology