Basic Information
Locus ID:
nbis-gene-17829
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00016.1 | 741399 | 743764 | + | nbis-gene-17829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 52,629.48 Da | 56.40 | 72.33 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 163 | 467 | 8.5E-77 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 124 | 493 | 2.14E-113 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 118 | 489 | 9.9E-108 | IPR012334 |
| SMART | SM00710 | pbh1 | 320 | 341 | 27.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 343 | 363 | 4300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 293 | 319 | 37.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 373 | 394 | 1.7 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 350 | 363 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 88 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_025806451.1 | polygalacturonase At1g48100 [Panicum hallii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HD15 | Polygalacturonase OS=Panicum hallii OX=206008 GN=PAHAL_3G377700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology