Basic Information
Locus ID:
nbis-gene-17565
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 3790025 | 3792381 | - | nbis-gene-17565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 59,635.07 Da | 41.24 | 80.65 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 71 | 330 | 8.01663E-124 | - |
| Pfam | PF13499 | EF-hand domain pair | 381 | 437 | 1.2E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 72 | 331 | 1.4E-66 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 449 | 507 | 8.1E-11 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 62 | 342 | 2.56E-80 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 355 | 520 | 1.78E-39 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 73 | 158 | 1.1E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 340 | 510 | 9.8E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 159 | 339 | 6.0E-62 | - |
| SMART | SM00054 | efh_1 | 378 | 406 | 0.26 | IPR002048 |
| SMART | SM00220 | serkin_6 | 72 | 331 | 9.6E-91 | IPR000719 |
| SMART | SM00054 | efh_1 | 482 | 510 | 1.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 414 | 442 | 0.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 450 | 478 | 0.0043 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 446 | 481 | 14.122869 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 410 | 445 | 9.464338 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 374 | 409 | 13.927603 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 485 | 513 | 10.831213 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 72 | 331 | 45.601242 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 459 | 471 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 491 | 503 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 423 | 435 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 193 | 205 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 387 | 399 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 78 | 105 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 62 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_008679475.1 | calcium-dependent protein kinase 21 isoform X1 [Zea mays] | 0 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T0J5 | Calcium-dependent protein kinase 30 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_47943 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |