Basic Information
Locus ID:
nbis-gene-17564
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 3784079 | 3789902 | + | nbis-gene-17564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 59,479.81 Da | 53.06 | 54.58 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 140 | 201 | 2.8E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 218 | 266 | 6.1E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 208 | 4.24E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 495 | 523 | 1.13E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 268 | 5.7E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 149 | 5.46E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 155 | 3.6E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 493 | 524 | 4.8E-8 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 197 | 459 | 1.7E-86 | - |
| SMART | SM00647 | ibrneu5 | 140 | 201 | 1.0E-19 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 214 | 275 | 0.054 | IPR002867 |
| SMART | SM00547 | zf_4 | 498 | 522 | 5.5E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 67 | 279 | 48.647018 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 496 | 524 | 8.535414 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 117 | 9.258371 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 500 | 519 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 495 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6PLX9 | RBR-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM14G19730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology