Basic Information
Locus ID:
nbis-gene-17501
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 3499406 | 3503624 | - | nbis-gene-17501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 46,634.80 Da | 44.76 | 63.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 299 | 415 | 2.9E-15 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 216 | 281 | 3.5E-8 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 82 | 150 | 5.7E-7 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 150 | 7.06E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 281 | 9.42E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 305 | 417 | 2.94E-20 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 285 | 4.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 167 | 2.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 293 | 420 | 2.6E-21 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 214 | 282 | 14.283028 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 418 | 13.752722 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 80 | 150 | 13.10261 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 348 | 367 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_025797471.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Panicum hallii] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T0R0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology