Basic Information
Locus ID:
nbis-gene-17450
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 3260619 | 3264848 | + | nbis-gene-17450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 43,882.89 Da | 40.40 | 77.96 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 235 | 309 | 1.30718E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 237 | 303 | 2.8E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 183 | 1.5E-7 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 94 | 7.8E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 24 | 104 | 3.63E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 227 | 316 | 6.65E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 104 | 192 | 1.76E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 109 | 208 | 1.9E-17 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 210 | 313 | 2.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 23 | 108 | 3.6E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 27 | 96 | 2.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 112 | 185 | 1.9E-9 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 236 | 305 | 6.4E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | 9.79736 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 235 | 309 | 16.090803 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 100 | 14.862814 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 232 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology