halophFGD

Basic Information

Locus ID: nbis-gene-1720

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Short Name: SIZ1

Description: Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00002.1	1561783	1565877	-	nbis-gene-1720

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.79	11,575.53 Da	47.98	79.00	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K16063 (E3 SUMO-protein ligase PIAS2 [EC:2.3.2.-])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) map04630 (JAK-STAT signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_002439205.2	E3 SUMO-protein ligase SIZ1 isoform X4 [Sorghum bicolor]	0
TrEMBL	A0A5J9U4M5	E3 SUMO-protein ligase SIZ1 OS=Eragrostis curvula OX=38414 GN=EJB05_34183 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35860, jg37540
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13010, gene_20874
Amaranthaceae	Atriplex hortensis	2	Ah034018, Ah037721
Amaranthaceae	Beta vulgaris	2	BVRB_2g036250, BVRB_9g208270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg20719, Sbi_jg23035, Sbi_jg2470, Sbi_jg59706
Amaranthaceae	Salicornia europaea	2	Seu_jg16908, Seu_jg24174
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009270, GOSA_00019725
Amaranthaceae	Suaeda glauca	6	Sgl62079, Sgl66640, Sgl78004, Sgl78635, Sgl81114, Sgl81125
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000015931, gene:ENSEOMG00000021789 ... gene:ENSEOMG00000040194, gene:ENSEOMG00000049250, gene:ENSEOMG00000049561, gene:ENSEOMG00000051137, gene:ENSEOMG00000052512
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0012090, CQ.Regalona.r1.2BG0013580 ... CQ.Regalona.r1.9AG0005130, CQ.Regalona.r1.9BG0017160
Anacardiaceae	Pistacia vera	2	pistato.v30058990, pistato.v30171410
Apiaceae	Apium graveolens	3	Ag10G00550, Ag2G00942, Ag6G02249
Arecaceae	Cocos nucifera	2	COCNU_04G014350, COCNU_16G006840
Arecaceae	Phoenix dactylifera	3	gene-LOC103702873, gene-LOC103705467, gene-LOC103706660
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.240.V1.1, AsparagusV1_02.241.V1.1 ... AsparagusV1_08.3431.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G02525, Ftri12G22172, Ftri15G10358, Ftri16G28693 ... Ftri2G34024
Brassicaceae	Arabidopsis thaliana	1	AT5G60410.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10002397m.g.v1.0, Thhalv10012623m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g16000.v2.2, Sp6g22000.v2.2
Brassicaceae	Brassica nigra	2	BniB02g040190.2N, BniB05g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0647, Ceq08G1751
Casuarinaceae	Casuarina glauca	2	Cgl02G0657, Cgl08G1787
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g16350
Dunaliellaceae	Dunaliella salina	1	Dusal.0201s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g01620, gene.Thate06g02010
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.946
Plantaginaceae	Plantago ovata	3	Pov_00014677, Pov_00016004, Pov_00032308
Plumbaginaceae	Limonium bicolor	6	Lb1G01991, Lb1G07478, Lb2G12479, Lb2G14846, Lb3G20907 ... Lb6G31837
Poaceae	Echinochloa crus-galli	5	AH05.900, AH09.1971, BH05.903, BH09.2135, CH09.2277
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_5AG0378460, gene-QOZ80_5AG0406800 ... gene-QOZ80_5BG0425540, gene-QOZ80_5BG0454860, gene-QOZ80_9BG0695440
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0014340.1, HORVU.MOREX.r3.3HG0330990.1 ... HORVU.MOREX.r3.4HG0355130.1, HORVU.MOREX.r3.5HG0466170.1
Poaceae	Lolium multiflorum	4	gene-QYE76_003781, gene-QYE76_009119, gene-QYE76_058510 ... gene-QYE76_065250
Poaceae	Oryza coarctata	5	Oco09G001240, Oco10G001320, Oco22G000020 ... Ocoptg000061lG000140, Ocoptg000207lG000050
Poaceae	Oryza sativa	3	LOC_Os03g50980.1, LOC_Os05g03430.1, LOC_Os07g25890.1
Poaceae	Paspalum vaginatum	4	gene-BS78_05G002400, gene-BS78_07G061500 ... gene-BS78_08G001100, gene-BS78_09G026000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103003, Pt_Chr0103639, Pt_Chr0103654, Pt_Chr0500149 ... Pt_Chr0601051, Pt_Chr0705195
Poaceae	Sporobolus alterniflorus	11	Chr01G013180, Chr06G022330, Chr07G022480, Chr12G023580 ... Chr16G007900, Chr17G007040, Chr17G007050, Chr18G002070, Chr22G016060, Chr27G004880, Chr31G000090
Poaceae	Thinopyrum elongatum	4	Tel1E01G135700, Tel3E01G914900, Tel4E01G210000 ... Tel5E01G267800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG009060, gene_TRIDC1BG011220 ... gene_TRIDC4AG029360, gene_TRIDC4BG021080, gene_TRIDC5AG025790, gene_TRIDC5BG026910
Poaceae	Triticum aestivum	12	TraesCS1A02G065700.2, TraesCS1B02G083900.5 ... TraesCS1D02G066700.8, TraesCS3A02G538000.1, TraesCS3B02G603400.3, TraesCS3D02G543400.1, TraesCS4A02G182900.1, TraesCS4B02G135700.2, TraesCS4D02G130400.3, TraesCS5A02G155100.1, TraesCS5B02G153300.1, TraesCS5D02G160100.1
Poaceae	Zea mays	3	Zm00001eb163160_P002, Zm00001eb265410_P004 ... Zm00001eb355110_P001
Poaceae	Zoysia japonica	5	nbis-gene-1720, nbis-gene-18298, nbis-gene-26942 ... nbis-gene-50212, nbis-gene-50213
Poaceae	Zoysia macrostachya	3	Zma_g18318, Zma_g26340, Zma_g27622
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.1973, evm.TU.LG04.850, evm.TU.LG04.851 ... evm.TU.LG05.2088, evm.TU.LG23.231
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g35770, gene.Posoc01g36250, gene.Posoc10g04440
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.339, evm.TU.Scaffold_13_RagTag.733
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24401, nbisL1-mrna-30317
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1688, nbisL1-mrna-19745, nbisL1-mrna-8234
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16110, nbisL1-mrna-19613
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.422, evm.TU.utg000027l.368
Rhizophoraceae	Kandelia obovata	2	Maker00015770, Maker00017911
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4342, nbisL1-mrna-5619
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11836, nbisL1-mrna-15069
Salicaceae	Populus euphratica	6	populus_peu06301, populus_peu06302, populus_peu08379 ... populus_peu20133, populus_peu35513, populus_peu35520
Solanaceae	Lycium barbarum	2	gene-LOC132600440, gene-LOC132605953
Solanaceae	Solanum chilense	3	SOLCI000058200, SOLCI004655600, SOLCI005580000
Solanaceae	Solanum pennellii	2	gene-LOC107004529, gene-LOC107023585
Tamaricaceae	Reaumuria soongarica	2	gene_17146, gene_96
Tamaricaceae	Tamarix chinensis	2	TC02G1293, TC03G0012
Zosteraceae	Zostera marina	1	Zosma02g21490.v3.1