Basic Information
Locus ID:
nbis-gene-17156
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 1952037 | 1953095 | + | nbis-gene-17156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 36,801.96 Da | 63.89 | 77.95 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 208 | 250 | 7.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 256 | 3.09E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 256 | 6.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 209 | 249 | 5.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 209 | 250 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 352 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60080.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037459259.1 | E3 ubiquitin-protein ligase SIRP1-like [Triticum dicoccoides] | 0 |
| Q9CY62 | E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T307 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48765 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29079 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231180 |
| Apiaceae | Apium graveolens | 1 | Ag1G00397 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G003380, COCNU_08G002620 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706822, gene-LOC103708666, gene-LOC120112361 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G60080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006114m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g03130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g074400.2N |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g04150, gene.Cymno03g10680, gene.Cymno05g11760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g06490 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016882, Pov_00031121 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3218, BH08.1851, CH02.1238, CH02.4643, CH02.487 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0633530, gene-QOZ80_8BG0662680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0671600.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco15G013120, Oco16G009400 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g36170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G160700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403256 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G015470, Chr17G014900, Chr20G004450, Chr29G004250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G384000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG026680, gene_TRIDC7BG017250 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G211800.1.cds1, TraesCS7B02G118700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb406020_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17156, nbis-gene-47761 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23109, Zma_g24193 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g25170, gene.Posoc02g25540 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636059 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031828 |
| Zosteraceae | Zostera marina | 2 | Zosma03g31060.v3.1, Zosma04g18240.v3.1 |