Basic Information
Locus ID:
nbis-gene-17057
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 1422393 | 1430442 | + | nbis-gene-17057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 45,152.47 Da | 43.08 | 91.32 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 13 | 134 | 2.4E-8 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 10 | 264 | 5.25E-81 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 266 | 4.2E-90 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 410 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_002444415.1 | probable CCR4-associated factor 1 homolog 6 [Sorghum bicolor] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811R5P6 | poly(A)-specific ribonuclease OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS48664 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology