Basic Information
Locus ID:
nbis-gene-16976
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 1028704 | 1033398 | + | nbis-gene-16976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 27,069.84 Da | 58.27 | 88.18 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 213 | 245 | 3.1E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 192 | 216 | 4.2E-6 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 89 | 127 | 4.4E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 87 | 136 | 4.5E-10 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 199 | 257 | 8.51E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 209 | 255 | 2.4E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 82 | 132 | 1.2E-18 | - |
| SMART | SM00165 | uba_6 | 210 | 247 | 2.8E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 89 | 129 | 9.0E-5 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 90 | 130 | 11.679399 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 209 | 248 | 13.149322 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 221 | 235 | 1.8E-9 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 236 | 251 | 1.8E-9 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 167 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025821555.1 | probable ubiquitin receptor RAD23 isoform X2 [Panicum hallii] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0A9MQQ5 | Ubiquitin receptor RAD23 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology