Basic Information
Locus ID:
nbis-gene-16960
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00015.1 | 934372 | 944952 | + | nbis-gene-16960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 45,898.04 Da | 58.51 | 87.24 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 33 | 67 | 2.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 68 | 5.01E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 76 | 162 | 5.69E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 66 | 3.6E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 71 | 173 | 5.8E-7 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 89 | 114 | 0.15 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 115 | 140 | 63.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_002444372.1 | F-box protein SKIP28 [Sorghum bicolor] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T327 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_48979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology