Basic Information
Locus ID:
nbis-gene-16560
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00014.1 | 3698267 | 3702584 | - | nbis-gene-16560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 57,091.58 Da | 51.58 | 55.23 | -1.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 361 | 443 | 6.0E-17 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 459 | 490 | 2.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 361 | 443 | 2.3E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 415 | - | - |
| Coils | Coil | Coil | 395 | 424 | - | - |
| Coils | Coil | Coil | 350 | 392 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_004981310.1 | uncharacterized protein LOC101753781 [Setaria italica] | 0 |
| TrEMBL | A0A5J9WAS9 | PAPA-1 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03887 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology