Basic Information
Locus ID:
nbis-gene-16538
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00014.1 | 3615368 | 3624181 | + | nbis-gene-16538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 42,363.58 Da | 33.28 | 72.66 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 279 | 341 | 2.48962E-17 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 57 | 213 | 6.9E-41 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 278 | 341 | 9.7E-14 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 55 | 213 | 2.02E-46 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 250 | 354 | 9.08E-27 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 252 | 269 | 1.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 143 | 248 | 2.9E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 270 | 340 | 1.3E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 142 | 7.8E-28 | - |
| SMART | SM00054 | efh_1 | 315 | 343 | 1.0E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 243 | 271 | 7.2 | IPR002048 |
| SMART | SM00054 | efh_1 | 279 | 307 | 8.5E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 57 | 337 | 3.5E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 57 | 363 | 27.947878 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 275 | 310 | 13.034948 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 311 | 346 | 13.509171 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 288 | 300 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 252 | 264 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 63 | 86 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 324 | 336 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 177 | 189 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_025794993.1 | calcium-dependent protein kinase 8 [Panicum hallii] | 0 |
| Q75GE8 | Calcium-dependent protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6ESK5 | Calcium-dependent protein kinase 8 OS=Zea mays OX=4577 GN=CPK8_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 3 | Ag10G00154, Ag5G00634, AgUnG00261 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15433, nbis-gene-16538 |