Basic Information
Locus ID:
nbis-gene-16437
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00014.1 | 3207692 | 3210150 | + | nbis-gene-16437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 16,971.94 Da | 56.87 | 70.74 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 142 | 1.60039E-71 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 141 | 1.6E-48 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 147 | 4.2E-59 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 145 | 3.8E-63 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 147 | 2.7E-61 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 147 | 54.715038 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_002461515.1 | ubiquitin-conjugating enzyme E2 2 [Sorghum bicolor] | 0 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 0 | |
| TrEMBL | Q10C81 | Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g57790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology