Basic Information
Locus ID:
nbis-gene-15917
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00014.1 | 965205 | 970768 | + | nbis-gene-15917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 130,700.80 Da | 32.98 | 90.01 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 5 | 268 | 4.08537E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 227 | 1.8E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 299 | 719 | 4.2E-131 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 766 | 1168 | 8.0E-171 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 149 | 182 | 7.5E-4 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 273 | 545 | 4.71E-8 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 266 | 7.33E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 108 | 7.4E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 109 | 270 | 5.2E-52 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 591 | 763 | 3.5E-60 | - |
| SMART | SM00320 | WD40_4 | 144 | 183 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 114 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 268 | 150.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 109 | 1.4E-71 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 108 | 1164 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 227 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 185 | 10.574686 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_025793349.1 | coatomer subunit alpha-3 [Panicum hallii] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WBY4 | Coatomer subunit alpha OS=Eragrostis curvula OX=38414 GN=EJB05_04912 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology