Basic Information
Locus ID:
nbis-gene-15747
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00014.1 | 93180 | 95115 | + | nbis-gene-15747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 24,680.64 Da | 44.65 | 66.16 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 22 | 66 | 1.67152E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 69 | 2.2E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 77 | 6.89E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 82 | 2.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 64 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 13.226928 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 39 | 48 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 108 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025797134.1 | E3 ubiquitin-protein ligase RNF5-like [Panicum hallii] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9JBQ9 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology