HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbis-gene-1572
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Short Name: RHC1A
Description: zinc-ribbon
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00002.1 937859 941474 + nbis-gene-1572
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.18 45,679.16 Da 55.32 60.02 -0.53
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF14369 zinc-ribbon 200 231 6.3E-12 IPR039525
Gene Ontology
Molecular Function:
GO:0061630 (ubiquitin protein ligase activity)
KEGG Pathway
KO Term:
K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])
Best hit
Source Best Hit ID Description E-value
TAIR AT2G40830.1 RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. 0
RefSeq XP_025797929.1 probable E3 ubiquitin-protein ligase RHC1A [Panicum hallii] 0
Swiss-Prot O22197 Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 0
TrEMBL A0A3L6S716 RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G26060 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 5 jg15785, jg23176, jg28407, jg31414, jg37675
Aizoaceae Mesembryanthemum crystallinum 2 gene_11747, gene_1500
Amaranthaceae Atriplex hortensis 2 Ah005123, Ah015351
Amaranthaceae Beta vulgaris 1 BVRB_4g074340
Amaranthaceae Salicornia bigelovii 4 Sbi_jg17370, Sbi_jg25355, Sbi_jg62018, Sbi_jg9207
Amaranthaceae Salicornia europaea 2 Seu_jg19381, Seu_jg633
Amaranthaceae Suaeda aralocaspica 2 GOSA_00011150, GOSA_00015524
Amaranthaceae Suaeda glauca 4 Sgl24306, Sgl29481, Sgl42900, Sgl47692
Amaranthaceae Chenopodium album 5 gene:ENSEOMG00000008230, gene:ENSEOMG00000012169 ...
gene:ENSEOMG00000029602, gene:ENSEOMG00000034668, gene:ENSEOMG00000041229
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.4AG0002680, CQ.Regalona.r1.4BG0002800 ...
CQ.Regalona.r1.8AG0014310, CQ.Regalona.r1.8BG0015700
Anacardiaceae Pistacia vera 1 pistato.v30093830
Apiaceae Apium graveolens 4 Ag10G02208, Ag2G00826, Ag3G00810, Ag4G01255
Arecaceae Cocos nucifera 3 COCNU_04G008850, COCNU_12G004790, COCNU_16G002780
Arecaceae Phoenix dactylifera 5 gene-LOC103705061, gene-LOC103706291, gene-LOC103711708 ...
gene-LOC103712547, gene-LOC103722854
Asparagaceae Asparagus officinalis 3 AsparagusV1_02.1908.V1.1, AsparagusV1_05.57.V1.1 ...
AsparagusV1_06.1766.V1.1
Asteraceae Flaveria trinervia 3 Ftri15G13338, Ftri4G32413, Ftri8G00594
Brassicaceae Arabidopsis thaliana 4 AT1G60360.1, AT2G40830.2, AT3G10815.1, AT3G56580.2
Brassicaceae Eutrema salsugineum 4 Thhalv10006102m.g.v1.0, Thhalv10016932m.g.v1.0 ...
Thhalv10021967m.g.v1.0, Thhalv10025714m.g.v1.0
Brassicaceae Schrenkiella parvula 5 Sp3g09140.v2.2, Sp4g23160.v2.2, Sp5g05980.v2.2 ...
SpUn0008_0020.v2.2, SpUn0123_0010.v2.2
Brassicaceae Brassica nigra 6 BniB01g029350.2N, BniB01g054190.2N, BniB06g000330.2N ...
BniB07g025000.2N, BniB08g026420.2N, BniB08g071170.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq04G0839, Ceq07G1593, Ceq09G1838
Casuarinaceae Casuarina glauca 3 Cgl04G0948, Cgl07G1709, Cgl09G2014
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g00680, gene.Cymno03g12540
Hydrocharitaceae Thalassia testudinum 3 gene.Thate05g00970, gene.Thate05g03950, gene.Thate06g23560
Malvaceae Hibiscus hamabo Siebold & Zucc. 5 nbisL1-mrna-5242, nbisL1-mrna-5243, nbisL1-mrna-8378 ...
nbisL1-mrna-8409, nbisL1-mrna-8410
Nitrariaceae Nitraria sibirica 3 evm.TU.LG01.2666, evm.TU.LG06.927, evm.TU.LG08.1339
Plantaginaceae Plantago ovata 4 Pov_00000159, Pov_00000160, Pov_00021656, Pov_00026668
Plumbaginaceae Limonium bicolor 2 Lb3G15860, Lb5G27727
Poaceae Echinochloa crus-galli 8 AH02.3586, AH06.752, BH06.798, BH07.3418, CH01.4245 ...
CH02.2902, CH06.832, CH07.3492
Poaceae Eleusine coracana subsp. coracana 8 gene-QOZ80_1AG0036830, gene-QOZ80_1BG0086860 ...
gene-QOZ80_2AG0147020, gene-QOZ80_2BG0202590, gene-QOZ80_3AG0248320, gene-QOZ80_3BG0279920, gene-QOZ80_6AG0513290, gene-QOZ80_6BG0465110
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.3HG0295250.1, HORVU.MOREX.r3.6HG0619330.1 ...
HORVU.MOREX.r3.3HG0312030.1.CDS1, HORVU.MOREX.r3.7HG0663560.1.CDS1
Poaceae Lolium multiflorum 5 gene-QYE76_025658, gene-QYE76_027336, gene-QYE76_027338 ...
gene-QYE76_055934, gene-QYE76_067846
Poaceae Oryza coarctata 9 Oco01G022520, Oco02G023190, Oco03G022700, Oco04G023350 ...
Oco05G013570, Oco06G012820, Oco09G013030, Oco11G004980, Oco12G005050
Poaceae Oryza sativa 5 LOC_Os01g58780.1, LOC_Os02g52870.1, LOC_Os03g22830.2 ...
LOC_Os05g41520.1, LOC_Os06g10800.1
Poaceae Paspalum vaginatum 4 gene-BS78_01G354100, gene-BS78_03G308000 ...
gene-BS78_04G288100, gene-BS78_10G083800
Poaceae Puccinellia tenuiflora 4 Pt_Chr0404976, Pt_Chr0405014, Pt_Chr0601743, Pt_Chr0605493
Poaceae Sporobolus alterniflorus 12 Chr01G034690, Chr02G007110, Chr03G018140, Chr04G011410 ...
Chr05G026360, Chr06G001350, Chr07G010810, Chr09G019010, Chr11G020420, Chr12G004940, Chr13G003220, Chr15G002690
Poaceae Thinopyrum elongatum 5 Tel3E01G528800, Tel3E01G695800, Tel5E01G029300 ...
Tel6E01G584000, Tel7E01G320500
Poaceae Triticum dicoccoides 6 gene_TRIDC3AG062280, gene_TRIDC3BG069890 ...
gene_TRIDC6AG049490, gene_TRIDC6BG057940, gene_TRIDC7AG021130, gene_TRIDC7BG011160
Poaceae Triticum aestivum 12 TraesCS3A02G330900.1, TraesCS3A02G440000.1.cds1 ...
TraesCS3B02G361000.1, TraesCS3B02G474100.1.cds1, TraesCS3D02G324300.1, TraesCS3D02G432800.1.cds1, TraesCS6A02G330700.1, TraesCS6B02G361600.1.cds1, TraesCS6D02G309800.1, TraesCS7A02G169600.1.cds1, TraesCS7B02G074800.1.cds1, TraesCS7D02G170800.1.cds1
Poaceae Zea mays 4 Zm00001eb193570_P001, Zm00001eb256060_P001 ...
Zm00001eb279100_P001, Zm00001eb394660_P001
Poaceae Zoysia japonica 4 nbis-gene-11680, nbis-gene-1572, nbis-gene-21709 ...
nbis-gene-8596
Poaceae Zoysia macrostachya 4 Zma_g14508, Zma_g17226, Zma_g29320, Zma_g8822
Portulacaceae Portulaca oleracea 6 evm.TU.LG04.1926, evm.TU.LG06.411, evm.TU.LG08.1395 ...
evm.TU.LG18.1647, evm.TU.LG20.234, evm.TU.LG22.295
Posidoniaceae Posidonia oceanica 2 gene.Posoc02g30760, gene.Posoc02g33420
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_2_RagTag.1608, evm.TU.Scaffold_7_RagTag.1090 ...
evm.TU.Scaffold_7_RagTag.1577, evm.TU.Scaffold_8_RagTag.229
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-10087, nbisL1-mrna-18753, nbisL1-mrna-19891 ...
nbisL1-mrna-3715
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-14947, nbisL1-mrna-19385, nbisL1-mrna-5592 ...
nbisL1-mrna-8536
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-13084, nbisL1-mrna-13510, nbisL1-mrna-17856 ...
nbisL1-mrna-18996
Rhizophoraceae Kandelia candel 4 add.evm.TU.utg000002l.170, add.evm.TU.utg000002l.47 ...
add.evm.TU.utg000009l.114, add.evm.TU.utg000018l.337
Rhizophoraceae Kandelia obovata 2 Maker00005537, Maker00011857
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-17823, nbisL1-mrna-17970, nbisL1-mrna-20003 ...
nbisL1-mrna-22060
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-11376, nbisL1-mrna-12267, nbisL1-mrna-21804 ...
nbisL1-mrna-9849
Salicaceae Populus euphratica 4 populus_peu10767, populus_peu26344, populus_peu30502 ...
populus_peu32391
Solanaceae Lycium barbarum 5 gene-LOC132598712, gene-LOC132605160, gene-LOC132621805 ...
gene-LOC132626279, gene-LOC132635409
Solanaceae Solanum chilense 4 SOLCI002404300, SOLCI002646800, SOLCI006278400 ...
SOLCI007512100
Solanaceae Solanum pennellii 4 gene-LOC107004150, gene-LOC107013159, gene-LOC107026960 ...
gene-LOC107029258
Tamaricaceae Reaumuria soongarica 1 STRG.27995_chr04_-
Tamaricaceae Tamarix chinensis 3 TC02G2960, TC03G3056, TC09G2496
Zosteraceae Zostera marina 3 Zosma01g12020.v3.1, Zosma01g12040.v3.1, Zosma01g15280.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.