Basic Information
Locus ID:
nbis-gene-15456
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
GYRA
Description:
DNA gyrase/topoisomerase IV, subunit A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00013.1 | 3850251 | 3851907 | - | nbis-gene-15456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.23 | 13,730.50 Da | 77.67 | 74.84 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56719 | Type II DNA topoisomerase | 84 | 128 | 7.59E-14 | IPR013760 |
| Gene3D | G3DSA:3.90.199.10 | Topoisomerase II, domain 5 | 84 | 128 | 2.0E-14 | IPR013758 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10690.1 | DNA GYRASE A. | 0 |
| RefSeq | XP_024317727.1 | probable DNA gyrase subunit A, chloroplastic/mitochondrial [Brachypodium distachyon] | 0 |
| Q7XZF7 | Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GYRA PE=2 SV=2 | 0 | |
| TrEMBL | I1GLQ8 | DNA topoisomerase (ATP-hydrolyzing) OS=Brachypodium distachyon OX=15368 GN=100842594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3046.V1.1, AsparagusV1_03.3048.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB04g013020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1488 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1478 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15456 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23658 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16320 |