Basic Information
Locus ID:
nbis-gene-1544
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 762159 | 772359 | + | nbis-gene-1544 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 83,654.82 Da | 51.01 | 75.84 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 153 | 256 | 1.23676E-11 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 514 | 594 | 2.6E-20 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 36 | 101 | 1.51E-5 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 153 | 313 | 5.69E-17 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 123 | 209 | 3.5E-8 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 228 | 317 | 2.4E-9 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 150 | 307 | 3.0E-4 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 1 | 97 | 7.3541 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 474 | - | - |
| Coils | Coil | Coil | 718 | 738 | - | - |
| Coils | Coil | Coil | 472 | 499 | - | - |
| Coils | Coil | Coil | 563 | 597 | - | - |
| Coils | Coil | Coil | 504 | 538 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_025794933.1 | rho GTPase-activating protein 7-like isoform X2 [Panicum hallii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IQL7 | Rho GTPase-activating protein 7-like OS=Panicum hallii OX=206008 GN=PAHAL_9G459800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology