Basic Information
Locus ID:
nbis-gene-15434
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00013.1 | 3744214 | 3750804 | + | nbis-gene-15434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 114,620.90 Da | 42.12 | 80.43 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 221 | 735 | 1.6E-217 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 818 | 1048 | 4.3E-92 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 417 | 738 | 5.72E-54 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 420 | 737 | 6.4E-12 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 159 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_025794548.1 | probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Panicum hallii] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6S6T5 | galactinol--sucrose galactosyltransferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G44030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology