Basic Information
Locus ID:
nbis-gene-15121
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00013.1 | 2517235 | 2519064 | + | nbis-gene-15121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 12,468.76 Da | 41.43 | 68.42 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 87 | 7.52E-24 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 3.2E-43 | IPR014722 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 18 | 88 | 1.1E-26 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 85 | 4.9E-38 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 83 | 112 | 0.46 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 51 | 58 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_008651866.1 | eukaryotic translation initiation factor 5A isoform X1 [Zea mays] | 0 |
| P80639 | Eukaryotic translation initiation factor 5A OS=Zea mays OX=4577 GN=TIF5A PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D6F0E2 | Eukaryotic translation initiation factor 5A OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d006760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology