Basic Information
Locus ID:
nbis-gene-14802
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00013.1 | 1008585 | 1011236 | + | nbis-gene-14802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 28,013.69 Da | 62.73 | 50.96 | -1.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 86 | 114 | 2.2E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 78 | 116 | 5.49E-9 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 77 | 117 | 5.8E-16 | - |
| SMART | SM00547 | zf_4 | 88 | 112 | 2.3E-8 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 86 | 115 | 10.398627 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 90 | 109 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 249 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_002466591.1 | zinc finger protein VAR3, chloroplastic [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology