Basic Information
Locus ID:
nbis-gene-14503
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Chitinase class I
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00012.1 | 4313228 | 4317262 | + | nbis-gene-14503 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 57,860.31 Da | 39.99 | 71.86 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 303 | 531 | 3.95252E-108 | - |
| CDD | cd00035 | ChtBD1 | 244 | 282 | 1.76765E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 244 | 281 | 1.8E-11 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 300 | 531 | 1.2E-130 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 297 | 538 | 1.27E-106 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 244 | 286 | 1.19E-10 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 305 | 537 | 2.1E-119 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 383 | 440 | 2.1E-119 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 242 | 284 | 8.9E-15 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 244 | 281 | 4.9E-16 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 242 | 283 | 10.890805 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 318 | 340 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 444 | 454 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 254 | 273 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 252 | 260 | 7.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 260 | 267 | 7.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 267 | 274 | 7.7E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | NP_001150560.1 | Chitinase 2 precursor [Zea mays] | 0 |
| Q7DNA1 | Chitinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RYD1 | chitinase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS57981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology