Basic Information
Locus ID:
nbis-gene-14452
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00012.1 | 4058600 | 4067250 | + | nbis-gene-14452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 17,189.94 Da | 37.38 | 76.37 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 28 | 56 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 141 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 27 | 146 | 1.43E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 79 | 8.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 155 | 9.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 105 | 144 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 16 | 56 | 0.051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 23 | 56 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 143 | 9.97376 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_025881425.1 | LEC14B protein isoform X2 [Oryza sativa Japonica Group] | 0 |
| O24467 | LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U6K1 | WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_35476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg5559 |
| Apiaceae | Apium graveolens | 1 | Ag9G01818 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14452 |