Basic Information
Locus ID:
nbis-gene-14048
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00012.1 | 2113924 | 2117838 | + | nbis-gene-14048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 51,890.48 Da | 60.87 | 96.84 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 110 | 151 | 1.97919E-23 | - |
| Pfam | PF04564 | U-box domain | 107 | 170 | 1.1E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 171 | 1.53E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 175 | 2.2E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 109 | 172 | 1.7E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 105 | 179 | 33.164295 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G09800.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004961944.1 | U-box domain-containing protein 27 [Setaria italica] | 0 |
| Q9LXE3 | U-box domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=PUB28 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z650 | U-box domain-containing protein OS=Setaria italica OX=4555 GN=101754698 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.751.V1.1 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2285, BH05.2393, CH05.2483 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371690, gene-QOZ80_5BG0419120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075150.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014501 |
| Poaceae | Oryza coarctata | 1 | Oco09G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g36360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G159000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G018370, Chr18G010420, Chr22G007220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G447300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG040810, gene_TRIDC1BG046460 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G274800.1.cds1, TraesCS1B02G284200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb288830_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14048, nbis-gene-55990 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27121 |