Basic Information
Locus ID:
nbis-gene-136
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00001.1 | 534440 | 536274 | - | nbis-gene-136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 36,729.17 Da | 45.67 | 74.73 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 228 | 2.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 180 | 0.25 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 314 | 1.13E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 22 | 321 | 1.7E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 188 | 229 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 36 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 0.7 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_051210895.1 | autophagy-related protein 18d-like [Lolium perenne] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | N1QWK7 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology