Basic Information
Locus ID:
nbis-gene-13358
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 3895754 | 3900452 | - | nbis-gene-13358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 32,136.10 Da | 47.61 | 77.18 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 114 | 168 | 1.9E-10 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 198 | 244 | 2.2E-7 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 83 | 257 | 3.08E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 53 | 158 | 2.5E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 159 | 191 | 3.3E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 192 | 256 | 1.2E-15 | IPR027417 |
| SMART | SM00490 | helicmild6 | 194 | 274 | 0.0026 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 90 | 118 | 11.112683 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 167 | 291 | 8.810954 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55150.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_025816290.1 | DEAD-box ATP-dependent RNA helicase 20 [Panicum hallii] | 0 |
| Q5QMN3 | DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2 | 0 | |
| TrEMBL | B9ETM9 | DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_00740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology