Basic Information
Locus ID:
nbis-gene-13146
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 2705607 | 2710917 | - | nbis-gene-13146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 70,561.02 Da | 50.66 | 65.69 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 384 | 513 | 2.50274E-64 | - |
| CDD | cd00201 | WW | 22 | 50 | 0.00316588 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 396 | 504 | 3.6E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 189 | 358 | 9.4E-48 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 52 | 1.8E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 237 | 520 | 1.17E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 374 | 546 | 1.2E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 140 | 373 | 1.1E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 184 | 387 | 6.8E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 20 | 53 | 4.2E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 424 | 504 | 5.3E-34 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 196 | 370 | 31.358101 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.0141 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 399 | 543 | 26.338444 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 165 | 193 | 10.025282 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 316 | 324 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 139 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_002455105.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X4 [Sorghum bicolor] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UCX5 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_31258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology