Basic Information
Locus ID:
nbis-gene-13104
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 2479937 | 2484458 | + | nbis-gene-13104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 44,366.92 Da | 30.10 | 74.49 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 270 | 7.33E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 363 | 9.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.0084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 71 | 68.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_039846342.1 | autophagy-related protein 18d-like [Panicum virgatum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6SHR5 | Autophagy-related protein 18d-like OS=Panicum miliaceum OX=4540 GN=C2845_PM07G00080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology