Basic Information
Locus ID:
nbis-gene-13097
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 2436358 | 2441434 | - | nbis-gene-13097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 112,974.01 Da | 56.50 | 86.84 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 535 | 562 | 0.35 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 911 | 952 | 1.1E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 737 | 843 | 2.0E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 503 | 704 | 1.4E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 844 | 998 | 2.0E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 534 | 567 | 0.0023 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 918 | 952 | 1.5E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 916 | 950 | 11.980759 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 531 | 565 | 8.867749 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| Coils | Coil | Coil | 228 | 255 | - | - |
| Coils | Coil | Coil | 158 | 185 | - | - |
| Coils | Coil | Coil | 112 | 139 | - | - |
| Coils | Coil | Coil | 260 | 322 | - | - |
| Coils | Coil | Coil | 189 | 223 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66631.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_004968314.1 | pentatricopeptide repeat-containing protein At5g66631 [Setaria italica] | 0 |
| B3H4P1 | Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana OX=3702 GN=At5g66631 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5VYT0 | Pentatricopeptide repeat-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19715 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24210 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026614 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg5904 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28090 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34667, Sgl40090 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005430, gene:ENSEOMG00000024647 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018220, CQ.Regalona.r1.6BG0019300 |
| Apiaceae | Apium graveolens | 1 | Ag5G00786 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G009340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711858 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1996.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03992 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66631.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005592m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g015460.2N, BniB06g015470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0719 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0728 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07150 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9994 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2262 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024048 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27941 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.526, CH02.605 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0010990, gene-QOZ80_1BG0059530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0234530.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_049898, gene-QYE76_049899, gene-QYE76_050008 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G002610, Oco02G002660 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g07340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G052600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200439 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G019360, Chr05G010350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G171000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG011620, gene_TRIDC3BG015670 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G096700.1.cds1, TraesCS3B02G112500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb123240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13097 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7659 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG05.224 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g16130, gene.Posoc05g19490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.287 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-336, nbisL1-mrna-538 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15533 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6019 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.444 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012818 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19355 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13759, nbisL1-mrna-2291 |
| Salicaceae | Populus euphratica | 3 | populus_peu14289, populus_peu14301, populus_peu37521 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623601 |
| Solanaceae | Solanum chilense | 1 | SOLCI002660400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009372 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_950 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2094 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25960.v3.1 |