Basic Information
Locus ID:
nbis-gene-12815
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 1162004 | 1162866 | - | nbis-gene-12815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 9,721.09 Da | 18.92 | 92.71 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 38 | 82 | 2.6E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 85 | 8.47E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 91 | 1.6E-10 | IPR013083 |
| SMART | SM00744 | ringv_2 | 37 | 87 | 3.0E-7 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 30 | 96 | 12.18228 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008654366.1 | uncharacterized protein LOC100193426 isoform X1 [Zea mays] | 0 |
| TrEMBL | A0A5J9VHK5 | RING-CH-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_17076 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology