Basic Information
Locus ID:
nbis-gene-12757
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 939329 | 944172 | - | nbis-gene-12757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 18,061.04 Da | 52.26 | 70.32 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 101 | 156 | 4.0E-18 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 44 | 76 | 4.18E-11 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 122 | 158 | 9.3E-18 | - |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 22 | 92 | 15.118212 | IPR017921 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.4 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010232248.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X3 [Brachypodium distachyon] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3IUV7 | RING finger and CHY zinc finger domain-containing protein 1 OS=Brachypodium distachyon OX=15368 GN=100826237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology