Basic Information
Locus ID:
nbis-gene-12617
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00011.1 | 249938 | 258448 | - | nbis-gene-12617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 98,412.09 Da | 51.91 | 78.75 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 39 | 165 | 6.90847E-33 | - |
| CDD | cd12108 | Hr-like | 288 | 416 | 1.6299E-18 | - |
| CDD | cd12108 | Hr-like | 637 | 705 | 2.06944E-14 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 167 | 2.1E-11 | IPR012312 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 185 | 4.4E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 287 | 435 | 2.8E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 632 | 710 | 1.0E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 563 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VID1 | Zinc finger protein BRUTUS OS=Eragrostis curvula OX=38414 GN=EJB05_17369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology