Basic Information
Locus ID:
nbis-gene-12026
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00010.1 | 471395 | 472225 | + | nbis-gene-12026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 29,237.23 Da | 56.01 | 78.95 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 23 | 67 | 1.02902E-16 | - |
| Pfam | PF13639 | Ring finger domain | 23 | 67 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 72 | 6.56E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 75 | 6.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 66 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 67 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 122 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_052149813.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Oryza glaberrima] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0D1K9 | RING-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3418, BH01.3771, CH01.4020 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0250950, gene-QOZ80_3BG0277360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0385990.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067506 |
| Poaceae | Oryza coarctata | 2 | Oco05G015100, Oco06G015550 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g27360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G333100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G024960, Chr04G012760, Chr07G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G353000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014260, gene_TRIDC4BG035820 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G104900.1, TraesCS4B02G199100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb019010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12026 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1079 |