Basic Information
Locus ID:
nbis-gene-11989
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00010.1 | 257883 | 259283 | - | nbis-gene-11989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 51,870.67 Da | 55.81 | 90.99 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 49 | 4.7E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 257 | 340 | 8.8E-7 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 60 | 2.88E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 50 | 3.8E-9 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 3.0E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 147 | 341 | 6.4E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 8.941087 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024312822.1 | uncharacterized protein LOC112269822 [Brachypodium distachyon] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9Z7T7 | F-box domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH01.3850, BH04.2111, CH01.4111, CH01.4112 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ... |
| Poaceae | Oryza sativa | 8 | LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G485500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11989, nbis-gene-47249, nbis-gene-49948 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1101, Zma_g3492, Zma_g3565 |