Basic Information
Locus ID:
nbis-gene-11828
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 4613829 | 4615624 | - | nbis-gene-11828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 46,544.79 Da | 55.74 | 64.54 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 275 | 296 | 7.0E-8 | IPR002653 |
| Pfam | PF01428 | AN1-like Zinc finger | 362 | 399 | 3.6E-8 | IPR000058 |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 353 | 414 | 1.3E-19 | IPR035896 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 276 | 298 | 6.84E-7 | - |
| Gene3D | G3DSA:1.20.5.4770 | - | 267 | 320 | 1.3E-9 | - |
| Gene3D | G3DSA:4.10.1110.10 | - | 337 | 417 | 6.4E-19 | IPR035896 |
| SMART | SM00259 | A20_3 | 273 | 297 | 3.8E-5 | IPR002653 |
| SMART | SM00154 | AN1_Zf_4 | 362 | 400 | 1.6E-5 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 270 | 304 | 8.613508 | IPR002653 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 359 | 403 | 10.61901 | IPR000058 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 96 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_023772087.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 7 [Lactuca sativa] | 0 |
| TrEMBL | A0A835E1A1 | Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Digitaria exilis OX=1010633 GN=HU200_059410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0034460, gene-QOZ80_1AG0034540 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G024780, Chr05G024860 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11828 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8729 |