Basic Information
Locus ID:
nbis-gene-11748
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 4285432 | 4300271 | + | nbis-gene-11748 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 135,216.91 Da | 52.35 | 72.71 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1059 | 1166 | 3.64632E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 488 | 810 | 1.3966E-87 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 506 | 888 | 4.2E-68 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 926 | 963 | 3.1E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1055 | 1156 | 5.8E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 923 | 975 | 2.91E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 819 | 1212 | 1.16E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 810 | 2.06E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 674 | 811 | 1.6E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 572 | 672 | 6.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 459 | 553 | 1.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 825 | 1213 | 2.8E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 920 | 1010 | 2.3E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 484 | 789 | 1.1E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 926 | 964 | 3.1E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1073 | 1156 | 7.7E-18 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 926 | 965 | 10.674659 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 503 | 772 | 12.156382 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1037 | 1209 | 14.223562 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 941 | 950 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 351 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004970180.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NTM4 | Helicase-like transcription factor CHR28 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20124 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology