Basic Information
Locus ID:
nbis-gene-11745
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 4270512 | 4276836 | - | nbis-gene-11745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 39,717.07 Da | 38.31 | 96.96 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 37 | 251 | 3.63623E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 158 | 4.3E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 256 | 323 | 9.6E-12 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 164 | 200 | 1.2E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 79 | 116 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 242 | 4.4E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 250 | 6.02E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 298 | 7.1E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 119 | 158 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 200 | 1.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 8.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 116 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 74 | 0.0075 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 84 | 118 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 41 | 73 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 126 | 160 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 84 | 125 | 15.922199 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 167 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 210 | 245 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 205 | 13.791033 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 41 | 83 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 209 | 17.827036 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 229 | 243 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 187 | 201 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 103 | 117 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 145 | 159 | 2.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 187 | 201 | 2.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 229 | 243 | 2.4E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_004970183.1 | katanin p80 WD40 repeat-containing subunit B1 homolog [Setaria italica] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VFY5 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eragrostis curvula OX=38414 GN=EJB05_16752 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology