Basic Information
Locus ID:
nbis-gene-11680
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 4002025 | 4002822 | - | nbis-gene-11680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 29,509.43 Da | 73.07 | 53.74 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 128 | 170 | 3.25565E-25 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 170 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 178 | 1.63E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 176 | 3.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 169 | 7.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 170 | 11.913911 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_034594707.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VFK1 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology