Basic Information
Locus ID:
nbis-gene-11333
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 2609781 | 2619239 | + | nbis-gene-11333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 61,763.84 Da | 42.06 | 88.12 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56784 | HAD-like | 157 | 400 | 2.2E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 503 | 546 | 2.15E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 155 | 410 | 5.3E-23 | IPR023214 |
| SMART | SM00577 | forpap2 | 219 | 383 | 6.2E-10 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 505 | 538 | 9.440645 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 160 | 396 | 14.057991 | IPR004274 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_004970633.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Setaria italica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7DEA0 | protein-serine/threonine phosphatase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G085500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology