Basic Information
Locus ID:
nbis-gene-11092
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 1598331 | 1604535 | + | nbis-gene-11092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 39,945.06 Da | 42.99 | 87.88 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 54 | 240 | 2.7E-87 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 275 | 330 | 3.01E-6 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 272 | 7.98E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 244 | 340 | 3.8E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 81 | 243 | 3.6E-71 | IPR027417 |
| SMART | SM00382 | AAA_5 | 104 | 285 | 0.0034 | IPR003593 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 82 | 241 | 36.399147 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 215 | 277 | 11.972652 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 248 | 277 | 1.4E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 140 | 169 | 1.4E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 174 | 203 | 1.4E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 212 | 241 | 1.4E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 302 | 319 | 1.4E-58 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 372 | - | - |
| Coils | Coil | Coil | 313 | 333 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_004970942.1 | DNA repair protein recA homolog 3, mitochondrial [Setaria italica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9P709 | IDP355 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology