Basic Information
Locus ID:
nbis-gene-11006
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 1142823 | 1143689 | + | nbis-gene-11006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 31,526.10 Da | 65.77 | 52.95 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 240 | 277 | 8.733E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 239 | 283 | 8.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 284 | 8.95E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 288 | 3.9E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 240 | 277 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 278 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 179 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_008656941.1 | uncharacterized protein LOC103636359 [Zea mays] | 0 |
| TrEMBL | A0A3L6D8R3 | RING-type domain-containing protein OS=Zea mays OX=4577 GN=Zm00014a_006187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology