Basic Information
Locus ID:
nbis-gene-10971
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 1019774 | 1021731 | + | nbis-gene-10971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 35,342.95 Da | 51.66 | 77.26 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 278 | 318 | 2.4E-6 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 118 | 187 | 5.23E-5 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 277 | 324 | 2.44E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 100 | 7.19E-7 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 264 | 323 | 6.4E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 105 | 260 | 1.4E-5 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 276 | 318 | 11.092784 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_039812977.1 | F-box protein At1g67340-like [Panicum virgatum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9I3Q9 | MYND-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology