Basic Information
Locus ID:
nbis-gene-10789
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00009.1 | 254582 | 258955 | - | nbis-gene-10789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 19,606.15 Da | 43.30 | 70.17 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 133 | 177 | 1.1429E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 131 | 171 | 1.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 173 | 3.53E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 178 | 2.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 166 | 0.0039 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 167 | 11.323791 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63970.1 | Copine (Calcium-dependent phospholipid-binding protein) family. | 0 |
| RefSeq | XP_039810185.1 | E3 ubiquitin-protein ligase RGLG3-like [Panicum virgatum] | 0 |
| Q8RX26 | E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VMZ3 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_18927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 3 | Ag2G02016, Ag4G00745, Ag6G00049 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0645s00008.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7304 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10789 |