Basic Information
Locus ID:
nbis-gene-10297
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00008.1 | 3455047 | 3459691 | - | nbis-gene-10297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 78,674.17 Da | 59.98 | 90.17 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 299 | 342 | 4.55215E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 679 | 721 | 5.08925E-19 | - |
| Pfam | PF13639 | Ring finger domain | 299 | 342 | 2.2E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 679 | 721 | 2.9E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 68 | 111 | 5.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 114 | 9.59E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 678 | 727 | 3.03E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 349 | 1.94E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 118 | 1.7E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 666 | 728 | 4.9E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 348 | 1.9E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 678 | 721 | 0.0071 | IPR011016 |
| SMART | SM00184 | ring_2 | 300 | 341 | 3.3E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 69 | 110 | 4.4E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 679 | 720 | 5.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 111 | 12.710573 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 300 | 342 | 12.577796 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 679 | 721 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 423 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_004965536.1 | RING-H2 finger protein ATL40 [Setaria italica] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5V8B2 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1881, CH06.1924 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0495060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709270.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_019878, gene-QYE76_019879, gene-QYE76_033977 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G010330, Oco12G010450 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400172, Pt_Chr0400181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028430, Chr05G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048570, gene_TRIDC7BG038760 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G348200.1.cds1, TraesCS7B02G234500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10297 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30648, Zma_g32887 |